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Protocol

IN SITU HYBRIDIZATION PROTOCOL

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IN SITU HYBRIDIZATION PROTOCOL Remember that all solutions should be sterile and RNAse precautions taken at all times i.e. gloves, sterile containers etc. should be used unless otherwise specified. SLIDE PREPARATION: A. PLL COATING: 1. a solution of .01% poly-l-lysine hydrogen bromide (MW 150,000-300,000, Sigma catalog P1399) is made in d2H20- 2. soak slides in PLL solution for 5 minutes 3. dry slides OIN 4. Slides can be kept at this stage for months at room temperature in dust free box. B. SILANATION: 1. make a 1.0 to 1.5% solution of gamma-aminopropyltriethoxysilane (Sigma A-3648). pH this solution to 3.45 and soak slides in this overnight. Solution can be reused if poured back into bottle, kept at room temperature in foil-covered bottle for 3-4 weeks. 2. wash slides extensively in H20- 3. Bake slides at 1000C ( in sterilizer) for 5 minutes AT THIS POINT YOU CAN STORE SLIDES AT ROOM TEMP FOR 6 MONTHS C. SIIANATED SLIDE ACTIVATION: 1. soak slides in 0.8% (v/v) glutaraldehyde in PBS (pH 7-0) for 30 minutes at RT. Use EM grade 8% glutaraldehyde made by Polyscience (Catalog #00216). 2. briefly rinse in water 3. soak in O.lM sodium m-periodate (2.14 grams/100 cc water, Sigma) for 15 minutes at RT 4. rinse in PBS 5. store slides at RT. AT THIS POINT YOU MUST PLACE SAMPLES ON SLIDES WITHIN TWO WEEKS NOTE: TISSUE SAMPLES OR CELLS ARE PLACED ON THE SLIDES AFTER SLIDE ACTIVATION. D. COVERSLIP PREPARATION: 1. Silanate coverslips by placing them in a dessicator with about 1 ml of dimethylchlorosilane (Sigma D-6258) until silane has evaporated. Coverslips may be used indefinitely.
TISSUE PREPARATION: A. CYTOSPINS: cells are suspended in media to a concentration ofabout 1 X 106 cells/ml. Using PLL-coated, silane-activated slides, cytospin 50 ul of cells per slide. Add 50 ul serum to each cytospin chamber as a chaser prior to spinning. Air dry cells, then promptly fix for 20 minutes in PLPG fixative (freshly made). Then, wash X 3 in H20. The slides are then passed through graded alcohols to dehydrate (70% X 2, 100% X 2) and stored at700C. B. FROZEN SECTIONS OF TISSUE: tissue is to be frozen immediately upon receipt (from biopsy, autopsy) in liquid nitrogen, or can be directly placed onto a chuck and frozen on OCT compound on dry ice. These chucks are then given to Mr. Hap Soban, (American Histolabs) along with prepared, activated slides, for sectioning. Procedures should be done with gloves. After sectioning, they can be stored indefinitely at -70 C, and fixed later, or fixed in PLPG, and then stored at -700C until use. C. PARAFFIN SECTIONS: Fresh tissue can be fixed in PLPG fixative directly and placed in paraffin blocks, or you can use standardly prepared specimens in paraffin blocks ( usually fixed in 4% paraformaldehyde). PLPG fixative yields a better signal, but both should work. Tissue paraffin blocks obtained from elsewhere can be sectioned directly onto the PLL-coated, silanated and activated slides. When ready to use slides, first bake slides at 55-600C for one hour, and then deparaffinize by placing slides in xylene f or 5 minutes X 2. Then pass through two washes of 100% ETOH. They can be stored in the refigeratopr in this state indefinitely. D.PLPG Fixative (Paraformaldehyde-Lysine-Periodate-Glutaraldehyde): l. Buffered lysine (O.lM lysine in 0.05 M Na2PO4) 18.3 g lysine monohydrochloride 13.4 9 Na2HP04.7H20 ( or 7.1 g anhydrous) 1 liter of d2H20 pH solution to 7.4 2. 4% paraformaldehyde (should be made fresh q 2 weeks) 20 g paraformaldehyde powder 500 ml d2H20 Heat on hot plate at 60 C until partially dissolved. Add 1ON NAOH dropwise, until solution clears. 3. 8% glutaraldehyde Polyscience EM grade glutaraldehyde (Catalog #00216) comes as an 8% solution TO PREPARE THE FINAL PLPG FIXATIVE MIXTURE: Mix 120 ml-of buffered lysine 20 ml paraformaldehyde solution 20 ml glutaraldehyde (2 10 ml 8% vials) 320 mg Na m-Periodate (Sigma) Mix with stirring bar until dissolved; Keep on ice 10 minutes bef ore use. Sterilize through 45 micron filter before use.
IN SITU HYBRIDIZATION PROTOCOL

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